Lung diseases due to external agents

J10_EXTERLUNG

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 J60-J70
  • Cause of death: ICD-10 J60-J70

2 out of 7 registries used, show all original rules.

4857

4. Check minimum number of events

None

4857

5. Include endpoints

5316

6. Filter based on genotype QC (FinnGen only)

5141

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2
First used in FinnGen datafreeze DF2

Similar endpoints

List of similar endpoints to Lung diseases due to external agents based on the number of shared cases.

Venn diagram with an highlighted set fully inside another set Similar with more cases:

Venn diagram with a set fully inside an highlighted set Similar with less cases:

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 65050 24383 39593
Only index persons 45747 17975 27772
Unadjusted period prevalence (%)
Whole population 0.95 0.70 1.11
Only index persons 0.90 0.66 1.06
Median age at first event (years)
Whole population 69.66 71.27 68.59
Only index persons 67.86 68.54 67.42

-FinnGen-

Key figures

All Female Male
Number of individuals 5141 1630 3511
Unadjusted period prevalence (%) 1.41 0.64 1.76
Median age at first event (years) 66.74 59.82 69.95

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint J10_EXTERLUNG and mortality.

Females

Parameter HR [95% CI] p-value
J10_EXTERLUNG 3.808 [3.36, 4.31] < 0.001
Birth year 0.998 [0.99, 1.01] 0.541

During the follow-up period (1.1.1998 — 31.12.2019), 6547 out of 12360 females with J10_EXTERLUNG died.

Males

Parameter HR [95% CI] p-value
J10_EXTERLUNG 3.701 [3.25, 4.21] < 0.001
Birth year 0.983 [0.97, 0.99] < 0.001

During the follow-up period (1.1.1998 — 31.12.2019), 11681 out of 21009 males with J10_EXTERLUNG died.

Mortality risk

Mortality risk for people of age

years, who have J10_EXTERLUNG.

N-year risk Females Males
1 0.464% 0.573%
5 2.347% 3.661%
10 5.493% 8.851%
15 9.994% 15.792%
20 18.381% 25.671%

Relationships between endpoints

Index endpoint: J10_EXTERLUNG – Lung diseases due to external agents

GWS hits: 1

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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