Pneumonitis due to solids and liquids

J10_PNEUMONISOLLIQ

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 J69
  • Hospital discharge: ICD-9 507
  • Cause of death: ICD-10 J69
  • Cause of death: ICD-9 507

2 out of 7 registries used, show all original rules.

2920

4. Check minimum number of events

None

2920

5. Include endpoints

None

2920

6. Filter based on genotype QC (FinnGen only)

2814

Control definitions (FinnGen only)

Control exclude J10_EXTERLUNG

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 J60-J70
Name in latin Pneumonitis ex inhalatione materiarum solidarum sive liquidarum

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 41557 15557 25376
Only index persons 29612 11342 18270
Unadjusted period prevalence (%)
Whole population 0.61 0.45 0.71
Only index persons 0.59 0.42 0.70
Median age at first event (years)
Whole population 73.64 77.32 71.37
Only index persons 73.14 76.95 70.78

-FinnGen-

Key figures

All Female Male
Number of individuals 2814 826 1988
Unadjusted period prevalence (%) 0.80 0.32 1.00
Median age at first event (years) 71.35 65.51 73.78

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint J10_PNEUMONISOLLIQ and mortality.

Females

Parameter HR [95% CI] p-value
J10_PNEUMONISOLLIQ 5.008 [4.19, 5.99] < 0.001
Birth year 0.999 [0.99, 1.01] 0.762

During the follow-up period (1.1.1998 — 31.12.2019), 4625 out of 7739 females with J10_PNEUMONISOLLIQ died.

Males

Parameter HR [95% CI] p-value
J10_PNEUMONISOLLIQ 5.458 [4.51, 6.61] < 0.001
Birth year 0.984 [0.98, 0.99] < 0.001

During the follow-up period (1.1.1998 — 31.12.2019), 7664 out of 12966 males with J10_PNEUMONISOLLIQ died.

Mortality risk

Mortality risk for people of age

years, who have J10_PNEUMONISOLLIQ.

N-year risk Females Males
1 0.382% 0.948%
5 3.355% 5.324%
10 8.338% 12.43%
15 15.089% 23.066%
20 25.524% 37.068%

Relationships between endpoints

Index endpoint: J10_PNEUMONISOLLIQ – Pneumonitis due to solids and liquids

GWS hits: 1

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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