Influenza and pneumonia

J10_INFLUPNEU

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 J09-J18
  • Cause of death: ICD-10 J09-J18

2 out of 7 registries used, show all original rules.

68858

4. Check minimum number of events

None

68858

5. Include endpoints

78367

6. Filter based on genotype QC (FinnGen only)

75441

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2
First used in FinnGen datafreeze DF2

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 1010197 448995 548933
Only index persons 735933 336508 399425
Unadjusted period prevalence (%)
Whole population 14.21 12.86 15.34
Only index persons 13.93 12.37 15.25
Median age at first event (years)
Whole population 64.90 68.38 61.89
Only index persons 59.27 63.59 55.63

-FinnGen-

Key figures

All Female Male
Number of individuals 75441 31921 43520
Unadjusted period prevalence (%) 17.91 12.54 21.86
Median age at first event (years) 61.92 56.11 66.19

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint J10_INFLUPNEU and mortality.

Females

Parameter HR [95% CI] p-value
J10_INFLUPNEU 3.184 [2.93, 3.47] < 0.001
Birth year 0.984 [0.98, 0.99] < 0.001

During the follow-up period (1.1.1998 — 31.12.2019), 104721 out of 278871 females with J10_INFLUPNEU died.

Males

Parameter HR [95% CI] p-value
J10_INFLUPNEU 3.736 [3.41, 4.09] < 0.001
Birth year 0.976 [0.97, 0.99] < 0.001

During the follow-up period (1.1.1998 — 31.12.2019), 123947 out of 312398 males with J10_INFLUPNEU died.

Mortality risk

Mortality risk for people of age

years, who have J10_INFLUPNEU.

N-year risk Females Males
1 0.146% 0.285%
5 0.923% 1.81%
10 2.341% 4.455%
15 4.229% 8.324%
20 7.082% 13.754%

Relationships between endpoints

Index endpoint: J10_INFLUPNEU – Influenza and pneumonia

GWS hits: 5

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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