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Pneumonia, organism unspecified

DOID Endpoint Browser

J10_PNEUMONAS

pneumonia: An acute, acute and chronic, or chronic inflammation focally or diffusely affecting the lung parenchyma, caused by an infection in one or both of the lungs (by bacteria, viruses, fungi, or mycoplasma.). Symptoms include cough, shortness of breath, fevers, chills, chest pain, headache, sweating, and weakness.

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Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — J18
  • Hospital discharge: ICD-9 — 485
  • Hospital discharge: ICD-8 — 4850[2-9]|486
  • Cause of death: ICD-10 — J18
  • Cause of death: ICD-9 — 485
  • Cause of death: ICD-8 — 4850[2-9]|486

2 out of 7 registries used, show all original rules.

62256

4. Check minimum number of events

None

62256

5. Include endpoints

None

62256

6. Filter based on genotype QC (FinnGen only)

60007

Control definitions (FinnGen only)

Control exclude J10_INFLUPNEU

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 J09-J18
Name in latin Pneumonia ab organismo non specificato

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

All Female Male
Number of individuals 60007 24715 35292
Unadjusted period prevalence (%) 14.42 9.71 17.72
Median age at first event (years) 64.30 58.69 68.22

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

Mortality – FinRegistry

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This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

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Index endpoint: J10_PNEUMONAS – Pneumonia, organism unspecified

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).