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Bacterial pneumonia (organism specified)

DOID Endpoint Browser

PNEUMOBACTKNOWN

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — J13, J14, J15, J16, J17*
  • Hospital discharge: ICD-9 — 48[1-3]
  • Hospital discharge: ICD-8 — 48199|482
  • Cause of death: ICD-10 — J13, J14, J15, J16, J17*
  • Cause of death: ICD-9 — 48[1-3]
  • Cause of death: ICD-8 — 48199|482

2 out of 7 registries used, show all original rules.

20751

4. Check minimum number of events

None

20751

5. Include endpoints

None

20751

6. Filter based on genotype QC (FinnGen only)

19975

Control definitions (FinnGen only)

Control exclude ASTHMA_PNEUMONIA

Extra metadata

First used in FinnGen datafreeze DF2

Similar endpoints

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List of similar endpoints to Bacterial pneumonia (organism specified) based on the number of shared cases.

Venn diagram with an highlighted set fully inside another set Similar with more cases:

Venn diagram with a set fully inside an highlighted set Similar with less cases:

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

All Female Male
Number of individuals 19975 8261 11714
Unadjusted period prevalence (%) 4.79 3.24 5.88
Median age at first event (years) 62.50 55.50 67.44

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

Mortality – FinRegistry

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This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

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Index endpoint: PNEUMOBACTKNOWN – Bacterial pneumonia (organism specified)

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).