No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
473681 |
1. Apply sex-specific ruleNone |
473681 |
2. Check conditionsNone |
473681 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
3685 |
4. Check minimum number of eventsNone |
3685 |
5. Include endpoints |
3966 |
6. Filter based on genotype QC (FinnGen only) |
3821 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
Level in the ICD hierarchy
2
First used in FinnGen datafreeze
DF2
Parent code in ICD-10
D10-D36
Name in latin
Neoplasma benignum oris sive pharyngis
Similar endpoints
↥List of similar endpoints to
Benign neoplasm of mouth and pharynx
based on the number of shared cases.
Similar with more cases:
- Benign neoplasm of mouth and pharynx
- Benign neoplasms
- Benign neoplasms
- Neoplasms
- Any event in hilmo or specialist outpatient
Similar with less cases:
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 30467 | 16198 | 14066 |
| Only index persons | 27451 | 14935 | 12516 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.43 | 0.46 | 0.39 |
| Only index persons | 0.52 | 0.55 | 0.48 |
| Median age at first event (years) | |||
| Whole population | 55.34 | 55.81 | 54.77 |
| Only index persons | 54.50 | 55.16 | 53.72 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 3821 | 2087 | 1734 |
| Unadjusted period prevalence (%) | 0.84 | 0.82 | 0.87 |
| Median age at first event (years) | 57.22 | 55.43 | 59.37 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
Mortality – FinRegistry
↥Association
Association between endpoint CD2_BENIGN_MOUTH_PHARYNX and mortality.
Females
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| CD2_BENIGN_MOUTH_PHARYNX | 1.122 [1.02, 1.23] | 0.016 |
| Birth year | 0.996 [0.99, 1.0] | 0.365 |
During the follow-up period (1.1.1998 — 31.12.2019), 2155 out of 12804 females with CD2_BENIGN_MOUTH_PHARYNX died.
Males
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| CD2_BENIGN_MOUTH_PHARYNX | 1.3 [1.18, 1.43] | < 0.001 |
| Birth year | 0.994 [0.98, 1.0] | 0.204 |
During the follow-up period (1.1.1998 — 31.12.2019), 2523 out of 10970 males with CD2_BENIGN_MOUTH_PHARYNX died.
Mortality risk
Mortality risk for people of age
years, who have CD2_BENIGN_MOUTH_PHARYNX.| N-year risk | Females | Males |
|---|---|---|
| 1 | 0.094% | 0.33% |
| 5 | 0.624% | 1.878% |
| 10 | 1.662% | 4.503% |
| 15 | 3.1% | 8.47% |
| 20 | 5.655% | 14.488% |
Relationships between endpoints
↥Index endpoint: CD2_BENIGN_MOUTH_PHARYNX – Benign neoplasm of mouth and pharynx
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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