Oral leukoplakia and related diseases

K11_ORAL_LEUCOPLAC_RELAT

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 K13.2
  • Cause of death: ICD-10 K13.2

2 out of 7 registries used, show all original rules.

1842

4. Check minimum number of events

None

1842

5. Include endpoints

None

1842

6. Filter based on genotype QC (FinnGen only)

1778

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

First used in FinnGen datafreeze DF6

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 11356 6396 4921
Only index persons 10736 6104 4632
Unadjusted period prevalence (%)
Whole population 0.16 0.18 0.14
Only index persons 0.20 0.22 0.18
Median age at first event (years)
Whole population 59.45 60.72 57.82
Only index persons 59.14 60.32 57.57

-FinnGen-

Key figures

All Female Male
Number of individuals 1778 1034 744
Unadjusted period prevalence (%) 0.39 0.41 0.37
Median age at first event (years) 59.75 59.00 60.79

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint K11_ORAL_LEUCOPLAC_RELAT and mortality.

Females

Parameter HR [95% CI] p-value
K11_ORAL_LEUCOPLAC_RELAT 1.15 [1.04, 1.27] 0.005
Birth year 0.994 [0.98, 1.0] 0.175

During the follow-up period (1.1.1998 — 31.12.2019), 1192 out of 5953 females with K11_ORAL_LEUCOPLAC_RELAT died.

Males

Parameter HR [95% CI] p-value
K11_ORAL_LEUCOPLAC_RELAT 1.278 [1.15, 1.42] < 0.001
Birth year 0.994 [0.98, 1.0] 0.25

During the follow-up period (1.1.1998 — 31.12.2019), 1068 out of 4459 males with K11_ORAL_LEUCOPLAC_RELAT died.

Mortality risk

Mortality risk for people of age

years, who have K11_ORAL_LEUCOPLAC_RELAT.

N-year risk Females Males
1 0.089% 0.354%
5 0.599% 1.888%
10 1.725% 4.593%
15 3.232% 8.523%
20 5.64% 14.425%

Relationships between endpoints

Index endpoint: K11_ORAL_LEUCOPLAC_RELAT – Oral leukoplakia and related diseases

GWS hits: 1

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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