Disorders of psychological development

F5_PSYCHDEV

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 F80-F89
  • Cause of death: ICD-10 F80-F89

2 out of 7 registries used, show all original rules.

4853

4. Check minimum number of events

None

4853

5. Include endpoints

5247

6. Filter based on genotype QC (FinnGen only)

4861

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2
First used in FinnGen datafreeze DF2

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 145720 47114 98516
Only index persons 116461 38516 77945
Unadjusted period prevalence (%)
Whole population 2.30 1.35 2.75
Only index persons 2.46 1.42 2.98
Median age at first event (years)
Whole population 6.90 7.79 6.45
Only index persons 7.91 9.33 7.20

-FinnGen-

Key figures

All Female Male
Number of individuals 4861 2358 2503
Unadjusted period prevalence (%) 1.10 0.93 1.26
Median age at first event (years) 11.61 14.36 9.02

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint F5_PSYCHDEV and mortality.

Females

Parameter HR [95% CI] p-value
F5_PSYCHDEV 2.395 [1.83, 3.14] < 0.001
Birth year 0.993 [0.98, 1.0] 0.131

During the follow-up period (1.1.1998 — 31.12.2019), 734 out of 37554 females with F5_PSYCHDEV died.

Males

Parameter HR [95% CI] p-value
F5_PSYCHDEV 2.288 [1.8, 2.91] < 0.001
Birth year 0.985 [0.98, 0.99] 0.002

During the follow-up period (1.1.1998 — 31.12.2019), 1000 out of 80706 males with F5_PSYCHDEV died.

Mortality risk

Mortality risk for people of age

years, who have F5_PSYCHDEV.

N-year risk Females Males
1 0.191% 0.366%
5 1.211% 2.358%
10 3.3% 6.098%
15 6.343% 11.962%
20 10.734% 19.764%

Relationships between endpoints

Index endpoint: F5_PSYCHDEV – Disorders of psychological development

GWS hits: 1

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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