Other immunodeficiencies

D3_IMMUDEFOTHER

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D84
  • Cause of death: ICD-10 D84

2 out of 7 registries used, show all original rules.

-

4. Check minimum number of events

None

-

5. Include endpoints

352

6. Filter based on genotype QC (FinnGen only)

334

Control definitions (FinnGen only)

Control exclude D3_IMMUNEMECHANISM

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 D80-D89
Name in latin Aliae deficientiae immunales

Similar endpoints

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 2645 1656 973
Only index persons 2220 1431 789
Unadjusted period prevalence (%)
Whole population 0.04 0.05 0.03
Only index persons 0.04 0.05 0.03
Median age at first event (years)
Whole population 45.52 47.81 41.32
Only index persons 45.60 47.13 42.83

-FinnGen-

Key figures

All Female Male
Number of individuals 334 229 105
Unadjusted period prevalence (%) 0.08 0.09 0.05
Median age at first event (years) 47.72 45.37 52.86

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

Association

Association between endpoint D3_IMMUDEFOTHER and mortality.

Females

Parameter HR [95% CI] p-value
D3_IMMUDEFOTHER 1.966 [1.61, 2.4] < 0.001
Birth year 0.994 [0.99, 1.0] 0.164

During the follow-up period (1.1.1998 — 31.12.2019), 290 out of 1479 females with D3_IMMUDEFOTHER died.

Males

Parameter HR [95% CI] p-value
D3_IMMUDEFOTHER 2.078 [1.62, 2.67] < 0.001
Birth year 0.985 [0.98, 0.99] 0.002

During the follow-up period (1.1.1998 — 31.12.2019), 187 out of 855 males with D3_IMMUDEFOTHER died.

Mortality risk

Mortality risk for people of age

years, who have D3_IMMUDEFOTHER.

N-year risk Females Males
1 0.147% 0.391%
5 1.014% 2.209%
10 2.58% 5.648%
15 5.512% 10.441%
20 9.694% 17.119%

Relationships between endpoints

Index endpoint: D3_IMMUDEFOTHER – Other immunodeficiencies

GWS hits: 1

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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