Other and unspecified immunodeficiencies with predominantly antibody defects

D3_IMMUDEFANTIBODYNAS

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D80.8, D80.9
  • Hospital discharge: ICD-9 2790C|2790X
  • Cause of death: ICD-10 D80.8, D80.9
  • Cause of death: ICD-9 2790C|2790X

2 out of 7 registries used, show all original rules.

404

4. Check minimum number of events

None

404

5. Include endpoints

None

404

6. Filter based on genotype QC (FinnGen only)

388

Control definitions (FinnGen only)

Control exclude D3_IMMUNEMECHANISM

Extra metadata

Level in the ICD hierarchy 4
First used in FinnGen datafreeze DF2

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 1635 939 695
Only index persons 1497 874 623
Unadjusted period prevalence (%)
Whole population 0.02 0.03 0.02
Only index persons 0.03 0.03 0.02
Median age at first event (years)
Whole population 44.50 48.34 39.35
Only index persons 44.51 48.28 39.22

-FinnGen-

Key figures

All Female Male
Number of individuals 388 257 131
Unadjusted period prevalence (%) 0.09 0.10 0.07
Median age at first event (years) 49.29 48.85 50.16

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

Association

Association between endpoint D3_IMMUDEFANTIBODYNAS and mortality.

Females

Parameter HR [95% CI] p-value
D3_IMMUDEFANTIBODYNAS 3.692 [2.74, 4.98] < 0.001
Birth year 0.998 [0.99, 1.01] 0.678

During the follow-up period (1.1.1998 — 31.12.2019), 114 out of 759 females with D3_IMMUDEFANTIBODYNAS died.

Males

Parameter HR [95% CI] p-value
D3_IMMUDEFANTIBODYNAS 4.194 [2.91, 6.04] < 0.001
Birth year 0.987 [0.98, 1.0] 0.01

During the follow-up period (1.1.1998 — 31.12.2019), 101 out of 537 males with D3_IMMUDEFANTIBODYNAS died.

Mortality risk

Mortality risk for people of age

years, who have D3_IMMUDEFANTIBODYNAS.

N-year risk Females Males
1 0.49% 0.783%
5 2.474% 4.738%
10 6.1% 11.305%
15 11.228% 20.533%
20 18.82% 33.16%

Relationships between endpoints

Index endpoint: D3_IMMUDEFANTIBODYNAS – Other and unspecified immunodeficiencies with predominantly antibody defects

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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