Benign neoplasm of colon, rectum, anus and anal canal

CD2_BENIGN_COLORECANI

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D12
  • Cause of death: ICD-10 D12

2 out of 7 registries used, show all original rules.

25653

4. Check minimum number of events

None

25653

5. Include endpoints

26123

6. Filter based on genotype QC (FinnGen only)

25190

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2
First used in FinnGen datafreeze DF2
Parent code in ICD-10 D10-D36
Name in latin Neoplasma benignum intestini crassi

Similar endpoints

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 166694 83081 82674
Only index persons 152318 77591 74727
Unadjusted period prevalence (%)
Whole population 2.34 2.38 2.31
Only index persons 2.85 2.85 2.85
Median age at first event (years)
Whole population 66.20 66.21 66.18
Only index persons 65.73 65.73 65.74

-FinnGen-

Key figures

All Female Male
Number of individuals 25190 12388 12802
Unadjusted period prevalence (%) 5.66 4.87 6.43
Median age at first event (years) 65.49 64.09 66.84

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint CD2_BENIGN_COLORECANI and mortality.

Females

Parameter HR [95% CI] p-value
CD2_BENIGN_COLORECANI 1.236 [1.14, 1.34] < 0.001
Birth year 0.995 [0.99, 1.0] 0.223

During the follow-up period (1.1.1998 — 31.12.2019), 14200 out of 66651 females with CD2_BENIGN_COLORECANI died.

Males

Parameter HR [95% CI] p-value
CD2_BENIGN_COLORECANI 1.328 [1.21, 1.45] < 0.001
Birth year 0.988 [0.98, 1.0] 0.006

During the follow-up period (1.1.1998 — 31.12.2019), 19311 out of 66453 males with CD2_BENIGN_COLORECANI died.

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_COLORECANI.

N-year risk Females Males
1 0.104% 0.227%
5 0.658% 1.578%
10 1.776% 3.844%
15 3.638% 7.17%
20 6.368% 12.114%

Relationships between endpoints

Index endpoint: CD2_BENIGN_COLORECANI – Benign neoplasm of colon, rectum, anus and anal canal

GWS hits: 19

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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