Benign neoplasm: Colon, unspecified

CD2_BENIGN_COLON_NOS

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D12.6&
  • Hospital discharge: ICD-9 2113
  • Hospital discharge: ICD-8 21139
  • Cause of death: ICD-10 D12.6&
  • Cause of death: ICD-9 2113
  • Cause of death: ICD-8 21139

2 out of 7 registries used, show all original rules.

8869

4. Check minimum number of events

None

8869

5. Include endpoints

None

8869

6. Filter based on genotype QC (FinnGen only)

8548

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 4
First used in FinnGen datafreeze DF2
Parent code in ICD-10 D12
Name in latin Neoplasma benignum coli non specificati

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 61104 29072 31664
Only index persons 55444 27081 28363
Unadjusted period prevalence (%)
Whole population 0.86 0.83 0.88
Only index persons 1.04 1.00 1.08
Median age at first event (years)
Whole population 66.84 66.81 66.86
Only index persons 66.31 66.21 66.41

-FinnGen-

Key figures

All Female Male
Number of individuals 8548 3907 4641
Unadjusted period prevalence (%) 1.97 1.53 2.33
Median age at first event (years) 66.01 64.54 67.24

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint CD2_BENIGN_COLON_NOS and mortality.

Females

Parameter HR [95% CI] p-value
CD2_BENIGN_COLON_NOS 1.247 [1.15, 1.35] < 0.001
Birth year 0.994 [0.99, 1.0] 0.173

During the follow-up period (1.1.1998 — 31.12.2019), 5385 out of 24321 females with CD2_BENIGN_COLON_NOS died.

Males

Parameter HR [95% CI] p-value
CD2_BENIGN_COLON_NOS 1.32 [1.21, 1.44] < 0.001
Birth year 0.987 [0.98, 1.0] 0.007

During the follow-up period (1.1.1998 — 31.12.2019), 8211 out of 26460 males with CD2_BENIGN_COLON_NOS died.

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_COLON_NOS.

N-year risk Females Males
1 0.086% 0.228%
5 0.655% 1.469%
10 1.689% 3.79%
15 3.101% 7.273%
20 5.603% 12.508%

Relationships between endpoints

Index endpoint: CD2_BENIGN_COLON_NOS – Benign neoplasm: Colon, unspecified

GWS hits: 4

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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