Rapidly progressive nephritic syndrome

N14_RAPIDPROGNEPHRITIC

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 N01#
  • Hospital discharge: ICD-9 5804
  • Cause of death: ICD-10 N01#
  • Cause of death: ICD-9 5804

2 out of 7 registries used, show all original rules.

74

4. Check minimum number of events

None

74

5. Include endpoints

None

74

6. Filter based on genotype QC (FinnGen only)

70

Control definitions (FinnGen only)

Control exclude N14_GLOMERULAR

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 N00-N08
Name in latin Syndroma nephriticum cito progrediens

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 618 323 291
Only index persons 464 246 218
Unadjusted period prevalence (%)
Whole population 0.01 0.01 0.01
Only index persons 0.01 0.01 0.01
Median age at first event (years)
Whole population 58.72 58.87 58.31
Only index persons 52.82 52.51 53.16

-FinnGen-

Key figures

All Female Male
Number of individuals 70 35 35
Unadjusted period prevalence (%) 0.02 0.01 0.02
Median age at first event (years) 57.83 52.84 62.81

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

Association

Association between endpoint N14_RAPIDPROGNEPHRITIC and mortality.

Females

Parameter HR [95% CI] p-value
N14_RAPIDPROGNEPHRITIC 2.733 [1.89, 3.96] < 0.001
Birth year 0.994 [0.98, 1.0] 0.144

During the follow-up period (1.1.1998 — 31.12.2019), 78 out of 252 females with N14_RAPIDPROGNEPHRITIC died.

Males

Parameter HR [95% CI] p-value
N14_RAPIDPROGNEPHRITIC 3.037 [1.91, 4.83] < 0.001
Birth year 0.986 [0.98, 1.0] 0.004

During the follow-up period (1.1.1998 — 31.12.2019), 98 out of 231 males with N14_RAPIDPROGNEPHRITIC died.

Mortality risk

Mortality risk for people of age

years, who have N14_RAPIDPROGNEPHRITIC.

N-year risk Females Males
1 0.228% 0.493%
5 1.488% 3.599%
10 3.874% 8.098%
15 7.352% 15.216%
20 12.18% 24.741%

Relationships between endpoints

Index endpoint: N14_RAPIDPROGNEPHRITIC – Rapidly progressive nephritic syndrome

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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