Small plaque parapsoriasis

L12_PARAPSO_PLAQUE

parapsoriasis: one of a group of skin disorders that are characterized primarily by their resemblance to psoriasis (red, scaly lesions), rather than by their underlying etiology. Neoplasms can develop from parapsoriasis. For example, it can develop into cutaneous T-cell lymphoma.

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Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 L41.3, L41.4, L41.5
  • Hospital discharge: ICD-9 6962C
  • Cause of death: ICD-10 L41.3, L41.4, L41.5
  • Cause of death: ICD-9 6962C

2 out of 7 registries used, show all original rules.

88

4. Check minimum number of events

None

88

5. Include endpoints

None

88

6. Filter based on genotype QC (FinnGen only)

84

Control definitions (FinnGen only)

Control exclude L12_PAPULOSQUAMOUS

Extra metadata

Level in the ICD hierarchy 4
First used in FinnGen datafreeze DF2

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 705 263 436
Only index persons 632 248 384
Unadjusted period prevalence (%)
Whole population 0.01 0.01 0.01
Only index persons 0.01 0.01 0.01
Median age at first event (years)
Whole population 64.16 63.44 64.43
Only index persons 63.20 62.86 63.43

-FinnGen-

Key figures

All Female Male
Number of individuals 84 32 52
Unadjusted period prevalence (%) 0.02 0.01 0.03
Median age at first event (years) 61.69 60.89 62.17

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

Association

Association between endpoint L12_PARAPSO_PLAQUE and mortality.

Females

No data

Males

Parameter HR [95% CI] p-value
L12_PARAPSO_PLAQUE 0.861 [0.68, 1.09] 0.211
Birth year 0.982 [0.97, 0.99] < 0.001

During the follow-up period (1.1.1998 — 31.12.2019), 89 out of 367 males with L12_PARAPSO_PLAQUE died.

Mortality risk

Mortality risk for people of age

years, who have L12_PARAPSO_PLAQUE.

N-year risk Females Males
1 No data 0.148%
5 No data 0.872%
10 No data 2.253%
15 No data 4.263%
20 No data 7.145%

Relationships between endpoints

Index endpoint: L12_PARAPSO_PLAQUE – Small plaque parapsoriasis

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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