Oral leukoplakia, including avohilmo

K11_ORAL_LEUCOPLACIA_INCLAVO

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

3 out of 7 registries used, show all original rules.

861

4. Check minimum number of events

None

861

5. Include endpoints

None

861

6. Filter based on genotype QC (FinnGen only)

837

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

First used in FinnGen datafreeze DF7

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 5452 2705 2719
Only index persons 5235 2615 2620
Unadjusted period prevalence (%)
Whole population 0.08 0.08 0.08
Only index persons 0.10 0.10 0.10
Median age at first event (years)
Whole population 57.42 59.83 55.09
Only index persons 57.24 59.67 54.82

-FinnGen-

Key figures

All Female Male
Number of individuals 837 436 401
Unadjusted period prevalence (%) 0.19 0.17 0.20
Median age at first event (years) 58.27 58.13 58.41

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint K11_ORAL_LEUCOPLACIA_INCLAVO and mortality.

Females

Parameter HR [95% CI] p-value
K11_ORAL_LEUCOPLACIA_INCLAVO 1.138 [0.99, 1.31] 0.067
Birth year 0.989 [0.98, 1.0] 0.017

During the follow-up period (1.1.1998 — 31.12.2019), 415 out of 2412 females with K11_ORAL_LEUCOPLACIA_INCLAVO died.

Males

Parameter HR [95% CI] p-value
K11_ORAL_LEUCOPLACIA_INCLAVO 1.208 [1.05, 1.39] 0.008
Birth year 0.987 [0.98, 1.0] 0.012

During the follow-up period (1.1.1998 — 31.12.2019), 419 out of 2342 males with K11_ORAL_LEUCOPLACIA_INCLAVO died.

Mortality risk

Mortality risk for people of age

years, who have K11_ORAL_LEUCOPLACIA_INCLAVO.

N-year risk Females Males
1 0.085% 0.16%
5 0.554% 1.325%
10 1.446% 3.321%
15 2.758% 6.967%
20 4.837% 11.545%

Relationships between endpoints

Index endpoint: K11_ORAL_LEUCOPLACIA_INCLAVO – Oral leukoplakia, including avohilmo

GWS hits: 1

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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