Enteropathogenic Escherichia coli infection

ENTEROPATH_E_COLI

dysentery: Acute inflammation of the intestine associated with infectious diarrhea of various etiologies, generally acquired by eating contaminated food containing toxins, biological derived from bacteria or other microorganisms. Dysentery is characterized initially by watery feces then by bloody mucoid stools. It is often associated with abdominal pain; fever; and dehydration.

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Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 A04.0
  • Cause of death: ICD-10 A04.0

2 out of 7 registries used, show all original rules.

90

4. Check minimum number of events

None

90

5. Include endpoints

None

90

6. Filter based on genotype QC (FinnGen only)

84

Control definitions (FinnGen only)

Control exclude IBD_BACT_INTEST_INFECTIONS

Extra metadata

First used in FinnGen datafreeze DF2
Parent code in ICD-10 A04
Name in latin Infectio ab Escherichia coli enteropathogenica

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 847 440 403
Only index persons 730 388 342
Unadjusted period prevalence (%)
Whole population 0.01 0.01 0.01
Only index persons 0.01 0.01 0.01
Median age at first event (years)
Whole population 59.41 61.54 56.93
Only index persons 58.07 59.97 55.91

-FinnGen-

Key figures

All Female Male
Number of individuals 84 40 44
Unadjusted period prevalence (%) 0.02 0.02 0.02
Median age at first event (years) 63.17 62.78 63.52

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

Association

Association between endpoint ENTEROPATH_E_COLI and mortality.

Females

Parameter HR [95% CI] p-value
ENTEROPATH_E_COLI 2.339 [1.61, 3.41] < 0.001
Birth year 1.0 [0.99, 1.01] 0.938

During the follow-up period (1.1.1998 — 31.12.2019), 122 out of 367 females with ENTEROPATH_E_COLI died.

Males

Parameter HR [95% CI] p-value
ENTEROPATH_E_COLI 2.601 [1.56, 4.34] < 0.001
Birth year 0.982 [0.97, 0.99] < 0.001

During the follow-up period (1.1.1998 — 31.12.2019), 95 out of 334 males with ENTEROPATH_E_COLI died.

Mortality risk

Mortality risk for people of age

years, who have ENTEROPATH_E_COLI.

N-year risk Females Males
1 0.256% 0.401%
5 1.533% 2.463%
10 3.763% 6.297%
15 7.396% 12.017%
20 12.958% 19.635%

Relationships between endpoints

Index endpoint: ENTEROPATH_E_COLI – Enteropathogenic Escherichia coli infection

GWS hits: 1

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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