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Benign neoplasm: Other and unspecified parts of small intestine

DOID EFO Endpoint Browser PheWeb

CD2_BENIGN_SMALL_INTESTINE_OTH

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — D13.3&
  • Hospital discharge: ICD-9 — 2112
  • Hospital discharge: ICD-8 — 2112
  • Hospital discharge: excluded ICD-8 — 21121
  • Cause of death: ICD-10 — D13.3&
  • Cause of death: ICD-9 — 2112
  • Cause of death: ICD-8 — 2112
  • Cause of death: excluded ICD-8 — 21121

2 out of 7 registries used, show all original rules.

507

4. Check minimum number of events

None

507

5. Include endpoints

None

507

6. Filter based on genotype QC (FinnGen only)

466

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 4
First used in FinnGen datafreeze DF2
Parent code in ICD-10 D13
Name in latin Neoplasma benignum partis aliae sive non specificatae intestini

Similar endpoints

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List of similar endpoints to Benign neoplasm: Other and unspecified parts of small intestine based on the number of shared cases.

Venn diagram with an highlighted set fully inside another set Similar with more cases:

Venn diagram with a set fully inside an highlighted set Similar with less cases:

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 3252 1858 1376
Only index persons 2890 1708 1182
Unadjusted period prevalence (%)
Whole population 0.05 0.05 0.04
Only index persons 0.06 0.06 0.05
Median age at first event (years)
Whole population 62.51 61.87 63.38
Only index persons 61.66 61.29 62.20

-FinnGen-

Key figures

All Female Male
Number of individuals 466 290 176
Unadjusted period prevalence (%) 0.10 0.11 0.09
Median age at first event (years) 59.92 57.73 63.53

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

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Association

Association between endpoint CD2_BENIGN_SMALL_INTESTINE_OTH and mortality.

Females

Parameter HR [95% CI] p-value
CD2_BENIGN_SMALL_INTESTINE_OTH 1.31 [1.14, 1.51] < 0.001
Birth year 0.997 [0.99, 1.01] 0.472

During the follow-up period (1.1.1998 — 31.12.2019), 383 out of 1599 females with CD2_BENIGN_SMALL_INTESTINE_OTH died.

Males

Parameter HR [95% CI] p-value
CD2_BENIGN_SMALL_INTESTINE_OTH 1.317 [1.13, 1.54] < 0.001
Birth year 0.986 [0.98, 1.0] 0.01

During the follow-up period (1.1.1998 — 31.12.2019), 352 out of 1120 males with CD2_BENIGN_SMALL_INTESTINE_OTH died.

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_SMALL_INTESTINE_OTH.

N-year risk Females Males
1 0.148% 0.234%
5 0.834% 1.488%
10 2.109% 3.955%
15 3.974% 7.041%
20 6.921% 11.979%

Relationships between endpoints

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Index endpoint: CD2_BENIGN_SMALL_INTESTINE_OTH – Benign neoplasm: Other and unspecified parts of small intestine

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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