Benign neoplasm: Rectum

CD2_BENIGN_RECTUM

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D12.8&
  • Cause of death: ICD-10 D12.8&

2 out of 7 registries used, show all original rules.

6142

4. Check minimum number of events

None

6142

5. Include endpoints

None

6142

6. Filter based on genotype QC (FinnGen only)

5945

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 4
First used in FinnGen datafreeze DF2
Parent code in ICD-10 D12
Name in latin Neoplasma benignum recti

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 36424 17899 18367
Only index persons 34257 17060 17197
Unadjusted period prevalence (%)
Whole population 0.51 0.51 0.51
Only index persons 0.64 0.63 0.66
Median age at first event (years)
Whole population 66.72 66.83 66.59
Only index persons 66.35 66.46 66.25

-FinnGen-

Key figures

All Female Male
Number of individuals 5945 2807 3138
Unadjusted period prevalence (%) 1.35 1.10 1.58
Median age at first event (years) 65.95 64.39 67.34

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint CD2_BENIGN_RECTUM and mortality.

Females

Parameter HR [95% CI] p-value
CD2_BENIGN_RECTUM 1.154 [1.05, 1.26] 0.002
Birth year 0.994 [0.99, 1.0] 0.162

During the follow-up period (1.1.1998 — 31.12.2019), 3166 out of 15053 females with CD2_BENIGN_RECTUM died.

Males

Parameter HR [95% CI] p-value
CD2_BENIGN_RECTUM 1.235 [1.13, 1.35] < 0.001
Birth year 0.988 [0.98, 1.0] 0.009

During the follow-up period (1.1.1998 — 31.12.2019), 4227 out of 15319 males with CD2_BENIGN_RECTUM died.

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_RECTUM.

N-year risk Females Males
1 0.093% 0.236%
5 0.562% 1.354%
10 1.649% 3.303%
15 3.229% 6.434%
20 5.829% 11.181%

Relationships between endpoints

Index endpoint: CD2_BENIGN_RECTUM – Benign neoplasm: Rectum

GWS hits: 3

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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