Toxic effect of alcohol

ST19_TOXIC_EFFECT_ALCOHOL

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 T51
  • Hospital discharge: ICD-9 980
  • Hospital discharge: ICD-8 980
  • Hospital discharge: excluded ICD-10 T51.0
  • Hospital discharge: excluded ICD-9 9800
  • Cause of death: ICD-10 T51
  • Cause of death: ICD-9 980
  • Cause of death: ICD-8 980
  • Cause of death: excluded ICD-10 T51.0
  • Cause of death: excluded ICD-9 9800

2 out of 7 registries used, show all original rules.

755

4. Check minimum number of events

None

755

5. Include endpoints

None

755

6. Filter based on genotype QC (FinnGen only)

733

Control definitions (FinnGen only)

Extra metadata

Level in the ICD hierarchy 3
Special ALCOTOXIC
First used in FinnGen datafreeze DF4
Parent code in ICD-10 T51-T65
Name in latin Effectus alcoholicus toxicus

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 10946 3014 7772
Only index persons 7769 2497 5272
Unadjusted period prevalence (%)
Whole population 0.18 0.09 0.22
Only index persons 0.17 0.09 0.20
Median age at first event (years)
Whole population 28.20 21.94 30.22
Only index persons 22.55 19.17 24.15

-FinnGen-

Key figures

All Female Male
Number of individuals 733 264 469
Unadjusted period prevalence (%) 0.19 0.10 0.24
Median age at first event (years) 25.54 20.25 28.51

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

Association

Association between endpoint ST19_TOXIC_EFFECT_ALCOHOL and mortality.

Females

Parameter HR [95% CI] p-value
ST19_TOXIC_EFFECT_ALCOHOL 4.993 [3.52, 7.08] < 0.001
Birth year 0.988 [0.98, 1.0] 0.009

During the follow-up period (1.1.1998 — 31.12.2019), 113 out of 999 females with ST19_TOXIC_EFFECT_ALCOHOL died.

Males

Parameter HR [95% CI] p-value
ST19_TOXIC_EFFECT_ALCOHOL 5.096 [4.25, 6.11] < 0.001
Birth year 0.986 [0.98, 1.0] 0.003

During the follow-up period (1.1.1998 — 31.12.2019), 587 out of 2166 males with ST19_TOXIC_EFFECT_ALCOHOL died.

Mortality risk

Mortality risk for people of age

years, who have ST19_TOXIC_EFFECT_ALCOHOL.

N-year risk Females Males
1 0.512% 0.933%
5 2.421% 5.27%
10 6.017% 13.689%
15 11.05% 24.353%
20 18.141% 38.048%

Relationships between endpoints

Index endpoint: ST19_TOXIC_EFFECT_ALCOHOL – Toxic effect of alcohol

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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