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Infections of genitourinary tract in pregnancy

DOID EFO Endpoint Browser PheWeb

O15_PREG_GU_INFECT

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

only females

265735

2. Check conditions

None

265735

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — O23
  • Hospital discharge: ICD-9 — 646[5-6]
  • Hospital discharge: ICD-8 — 635
  • Cause of death: ICD-10 — O23
  • Cause of death: ICD-9 — 646[5-6]
  • Cause of death: ICD-8 — 635

2 out of 7 registries used, show all original rules.

3748

4. Check minimum number of events

None

3748

5. Include endpoints

None

3748

6. Filter based on genotype QC (FinnGen only)

3623

Control definitions (FinnGen only)

Control exclude O15_PREG_OTHER_MAT_DISORD

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF5
Parent code in ICD-10 O20-O29
Name in latin Infectiones organorum urogenitalium in graviditate

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 32333 32333 -
Only index persons 31397 31397 -
Unadjusted period prevalence (%)
Whole population 0.93 0.93 -
Only index persons 1.15 1.15 -
Median age at first event (years)
Whole population - 27.49 -
Only index persons - 27.51 -

-FinnGen-

Key figures

All Female Male
Number of individuals 3623 3623 -
Unadjusted period prevalence (%) 1.42 1.42 -
Median age at first event (years) 27.70 27.70 -

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Association

Association between endpoint O15_PREG_GU_INFECT and mortality.

Females

Parameter HR [95% CI] p-value
O15_PREG_GU_INFECT 0.778 [0.6, 1.01] 0.059
Birth year 0.991 [0.98, 1.0] 0.043

During the follow-up period (1.1.1998 — 31.12.2019), 71 out of 16270 females with O15_PREG_GU_INFECT died.

Males

No data

Mortality risk

Mortality risk for people of age

years, who have O15_PREG_GU_INFECT.

N-year risk Females Males
1 0.092% No data
5 0.409% No data
10 1.019% No data
15 1.982% No data
20 3.49% No data

Relationships between endpoints

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Index endpoint: O15_PREG_GU_INFECT – Infections of genitourinary tract in pregnancy

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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