Renal tubulo-interstitial disorders in diseases classified elsewhere

N14_RENALTUBULOINOTH

pyelonephritis: Inflammation of the KIDNEY involving the renal parenchyma (the NEPHRONS); KIDNEY PELVIS; and KIDNEY CALICES. It is characterized by ABDOMINAL PAIN; FEVER; NAUSEA; VOMITING; and occasionally DIARRHEA.

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Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 N16*
  • Cause of death: ICD-10 N16*

2 out of 7 registries used, show all original rules.

304

4. Check minimum number of events

None

304

5. Include endpoints

None

304

6. Filter based on genotype QC (FinnGen only)

287

Control definitions (FinnGen only)

Control exclude N14_RENALTUB

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 1856 880 962
Only index persons 1584 749 835
Unadjusted period prevalence (%)
Whole population 0.03 0.03 0.03
Only index persons 0.03 0.03 0.03
Median age at first event (years)
Whole population 62.48 63.34 61.63
Only index persons 62.08 62.77 61.46

-FinnGen-

Key figures

All Female Male
Number of individuals 287 140 147
Unadjusted period prevalence (%) 0.06 0.05 0.07
Median age at first event (years) 59.26 57.23 61.20

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

Association

Association between endpoint N14_RENALTUBULOINOTH and mortality.

Females

Parameter HR [95% CI] p-value
N14_RENALTUBULOINOTH 2.925 [2.31, 3.71] < 0.001
Birth year 0.995 [0.99, 1.0] 0.263

During the follow-up period (1.1.1998 — 31.12.2019), 286 out of 748 females with N14_RENALTUBULOINOTH died.

Males

Parameter HR [95% CI] p-value
N14_RENALTUBULOINOTH 2.812 [2.18, 3.63] < 0.001
Birth year 0.984 [0.97, 0.99] 0.001

During the follow-up period (1.1.1998 — 31.12.2019), 319 out of 809 males with N14_RENALTUBULOINOTH died.

Mortality risk

Mortality risk for people of age

years, who have N14_RENALTUBULOINOTH.

N-year risk Females Males
1 0.25% 0.476%
5 1.735% 2.944%
10 4.3% 7.322%
15 8.306% 13.33%
20 14.035% 21.922%

Relationships between endpoints

Index endpoint: N14_RENALTUBULOINOTH – Renal tubulo-interstitial disorders in diseases classified elsewhere

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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