Lichen sclerosus et atrophicus

L12_LICHENSCLERATROPH

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 L90.0
  • Hospital discharge: ICD-9 7010
  • Hospital discharge: ICD-8 70101
  • Cause of death: ICD-10 L90.0
  • Cause of death: ICD-9 7010
  • Cause of death: ICD-8 70101

2 out of 7 registries used, show all original rules.

3361

4. Check minimum number of events

None

3361

5. Include endpoints

None

3361

6. Filter based on genotype QC (FinnGen only)

3262

Control definitions (FinnGen only)

Control exclude L12_OTHERSKINSUBCUTIS

Extra metadata

Level in the ICD hierarchy 4
First used in FinnGen datafreeze DF2
Parent code in ICD-10 L90
Name in latin Lichen sclerosus et atrophicus

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 21817 18224 3552
Only index persons 21007 17541 3466
Unadjusted period prevalence (%)
Whole population 0.45 0.52 0.10
Only index persons 0.56 0.64 0.13
Median age at first event (years)
Whole population 60.38 64.39 39.87
Only index persons 60.31 64.36 39.85

-FinnGen-

Key figures

All Female Male
Number of individuals 3262 2842 420
Unadjusted period prevalence (%) 1.00 1.12 0.21
Median age at first event (years) 62.23 63.63 52.80

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint L12_LICHENSCLERATROPH and mortality.

Females

Parameter HR [95% CI] p-value
L12_LICHENSCLERATROPH 0.833 [0.75, 0.92] < 0.001
Birth year 0.988 [0.98, 1.0] 0.006

During the follow-up period (1.1.1998 — 31.12.2019), 1814 out of 13288 females with L12_LICHENSCLERATROPH died.

Males

Parameter HR [95% CI] p-value
L12_LICHENSCLERATROPH 0.786 [0.64, 0.97] 0.023
Birth year 0.992 [0.98, 1.0] 0.134

During the follow-up period (1.1.1998 — 31.12.2019), 145 out of 2735 males with L12_LICHENSCLERATROPH died.

Mortality risk

Mortality risk for people of age

years, who have L12_LICHENSCLERATROPH.

N-year risk Females Males
1 0.087% 0.13%
5 0.44% 0.996%
10 0.985% 2.672%
15 1.926% 5.039%
20 3.252% 8.678%

Relationships between endpoints

Index endpoint: L12_LICHENSCLERATROPH – Lichen sclerosus et atrophicus

GWS hits: 1

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
loading spinner Loading data