Acute nasopharyngitis (common cold)

J10_COLD

common cold: An upper respiratory tract disease which involves inflammation of the mucous membranes of the nose, throat, eyes, and eustachian tubes with watery then purulent discharge. This is an acute contagious disease caused by rhinoviruses, human parainfluenza viruses, human respiratory syncytial virus, influenza viruses, adenoviruses, enteroviruses, or metapneumovirus.

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Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 J00
  • Hospital discharge: ICD-9 460
  • Hospital discharge: ICD-8 460
  • Cause of death: ICD-10 J00
  • Cause of death: ICD-9 460
  • Cause of death: ICD-8 460

2 out of 7 registries used, show all original rules.

5069

4. Check minimum number of events

None

5069

5. Include endpoints

None

5069

6. Filter based on genotype QC (FinnGen only)

4925

Control definitions (FinnGen only)

Control exclude J10_UPPERINFEC

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 J00-J06
Name in latin Nasopharyngitis acuta

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 65629 15921 49486
Only index persons 56960 12411 44549
Unadjusted period prevalence (%)
Whole population 1.15 0.46 1.38
Only index persons 1.43 0.46 1.70
Median age at first event (years)
Whole population 20.93 23.74 19.98
Only index persons 20.79 23.64 20.00

-FinnGen-

Key figures

All Female Male
Number of individuals 4925 1410 3515
Unadjusted period prevalence (%) 1.42 0.55 1.77
Median age at first event (years) 22.01 26.66 20.14

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint J10_COLD and mortality.

Females

Parameter HR [95% CI] p-value
J10_COLD 1.352 [1.14, 1.6] < 0.001
Birth year 0.992 [0.98, 1.0] 0.058

During the follow-up period (1.1.1998 — 31.12.2019), 412 out of 6605 females with J10_COLD died.

Males

Parameter HR [95% CI] p-value
J10_COLD 1.28 [1.1, 1.49] 0.002
Birth year 0.987 [0.98, 1.0] 0.008

During the follow-up period (1.1.1998 — 31.12.2019), 409 out of 10441 males with J10_COLD died.

Mortality risk

Mortality risk for people of age

years, who have J10_COLD.

N-year risk Females Males
1 0.135% 0.228%
5 0.655% 1.443%
10 1.724% 3.817%
15 3.26% 7.192%
20 5.693% 11.954%

Relationships between endpoints

Index endpoint: J10_COLD – Acute nasopharyngitis (common cold)

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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