Haemophilus septicemia

HAEMOPHIL_SEPTICHE

Pasteurella hemorrhagic septicemia: Any of several bacterial diseases, usually caused by pasteurella multocida, marked by the presence of hemorrhagic areas in the subcutaneous tissues, serous membranes, muscles, lymph glands, and throughout the internal organs. The diseases primarily affect animals and rarely humans.

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Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 A41.3
  • Hospital discharge: ICD-9 0384A
  • Cause of death: ICD-10 A41.3
  • Cause of death: ICD-9 0384A

2 out of 7 registries used, show all original rules.

62

4. Check minimum number of events

None

62

5. Include endpoints

None

62

6. Filter based on genotype QC (FinnGen only)

59

Control definitions (FinnGen only)

Control exclude ASTHMA_SEPTICHE_PNEUMONIA

Extra metadata

First used in FinnGen datafreeze DF2
Parent code in ICD-10 A41
Name in latin Septic(h)aemia ab Haemophilo influenzae

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 634 322 306
Only index persons 485 264 221
Unadjusted period prevalence (%)
Whole population 0.01 0.01 0.01
Only index persons 0.01 0.01 0.01
Median age at first event (years)
Whole population 61.69 65.59 57.45
Only index persons 60.23 65.06 54.47

-FinnGen-

Key figures

All Female Male
Number of individuals 59 28 31
Unadjusted period prevalence (%) 0.01 0.01 0.02
Median age at first event (years) 58.23 53.20 62.78

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

No data

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

Association

Association between endpoint HAEMOPHIL_SEPTICHE and mortality.

Females

Parameter HR [95% CI] p-value
HAEMOPHIL_SEPTICHE 3.291 [1.69, 6.41] < 0.001
Birth year 0.999 [0.99, 1.01] 0.79

During the follow-up period (1.1.1998 — 31.12.2019), 77 out of 192 females with HAEMOPHIL_SEPTICHE died.

Males

Parameter HR [95% CI] p-value
HAEMOPHIL_SEPTICHE 3.733 [1.8, 7.73] < 0.001
Birth year 0.984 [0.97, 0.99] 0.001

During the follow-up period (1.1.1998 — 31.12.2019), 77 out of 182 males with HAEMOPHIL_SEPTICHE died.

Mortality risk

Mortality risk for people of age

years, who have HAEMOPHIL_SEPTICHE.

N-year risk Females Males
1 0.445% 0.698%
5 2.386% 3.852%
10 5.776% 9.398%
15 10.766% 17.086%
20 18.101% 28.376%

Relationships between endpoints

Index endpoint: HAEMOPHIL_SEPTICHE – Haemophilus septicemia

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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