Cerebral cysts

G6_CERCYST

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 G93
  • Hospital discharge: ICD-9 3480
  • Cause of death: ICD-10 G93
  • Cause of death: ICD-9 3480

2 out of 7 registries used, show all original rules.

2036

4. Check minimum number of events

None

2036

5. Include endpoints

None

2036

6. Filter based on genotype QC (FinnGen only)

1959

Control definitions (FinnGen only)

Control exclude G6_OTHNEU

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 G90-G99
Name in latin Aliae morbositates cerebri

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 20739 9226 11265
Only index persons 15721 7529 8192
Unadjusted period prevalence (%)
Whole population 0.29 0.26 0.31
Only index persons 0.30 0.28 0.31
Median age at first event (years)
Whole population 52.04 47.69 55.28
Only index persons 49.56 44.95 53.80

-FinnGen-

Key figures

All Female Male
Number of individuals 1959 1079 880
Unadjusted period prevalence (%) 0.43 0.42 0.44
Median age at first event (years) 49.81 42.14 59.20

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint G6_CERCYST and mortality.

Females

Parameter HR [95% CI] p-value
G6_CERCYST 3.663 [3.19, 4.21] < 0.001
Birth year 0.992 [0.98, 1.0] 0.072

During the follow-up period (1.1.1998 — 31.12.2019), 1185 out of 5799 females with G6_CERCYST died.

Males

Parameter HR [95% CI] p-value
G6_CERCYST 3.775 [3.36, 4.24] < 0.001
Birth year 0.989 [0.98, 1.0] 0.013

During the follow-up period (1.1.1998 — 31.12.2019), 2063 out of 6201 males with G6_CERCYST died.

Mortality risk

Mortality risk for people of age

years, who have G6_CERCYST.

N-year risk Females Males
1 0.347% 0.85%
5 2.303% 4.934%
10 5.1% 11.518%
15 9.267% 21.045%
20 15.851% 33.472%

Relationships between endpoints

Index endpoint: G6_CERCYST – Cerebral cysts

GWS hits: 1

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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