Lipoprotein deficiency

E4_LIPODEF

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 E78.6
  • Hospital discharge: ICD-9 2725
  • Cause of death: ICD-10 E78.6
  • Cause of death: ICD-9 2725

2 out of 7 registries used, show all original rules.

66

4. Check minimum number of events

None

66

5. Include endpoints

None

66

6. Filter based on genotype QC (FinnGen only)

61

Control definitions (FinnGen only)

Control exclude E4_METABOLIA

Extra metadata

Level in the ICD hierarchy 4
First used in FinnGen datafreeze DF2
Parent code in ICD-10 E78
Name in latin Deficientia lipoproteinorum

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 675 279 394
Only index persons 614 256 358
Unadjusted period prevalence (%)
Whole population 0.01 0.01 0.01
Only index persons 0.01 0.01 0.01
Median age at first event (years)
Whole population 65.75 68.29 63.94
Only index persons 65.71 68.17 63.94

-FinnGen-

Key figures

All Female Male
Number of individuals 61 21 40
Unadjusted period prevalence (%) 0.02 0.01 0.02
Median age at first event (years) 61.37 60.01 62.09

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

Association

Association between endpoint E4_LIPODEF and mortality.

Females

Parameter HR [95% CI] p-value
E4_LIPODEF 2.042 [1.38, 3.01] < 0.001
Birth year 0.996 [0.99, 1.0] 0.377

During the follow-up period (1.1.1998 — 31.12.2019), 88 out of 249 females with E4_LIPODEF died.

Males

Parameter HR [95% CI] p-value
E4_LIPODEF 2.28 [1.56, 3.33] < 0.001
Birth year 0.986 [0.98, 1.0] 0.006

During the follow-up period (1.1.1998 — 31.12.2019), 114 out of 343 males with E4_LIPODEF died.

Mortality risk

Mortality risk for people of age

years, who have E4_LIPODEF.

N-year risk Females Males
1 0.166% 0.293%
5 1.201% 2.475%
10 3.159% 6.698%
15 5.917% 12.738%
20 10.015% 20.311%

Relationships between endpoints

Index endpoint: E4_LIPODEF – Lipoprotein deficiency

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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