Other/unspecified cytomegaloviral diseases

CMV_NOS

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 B25.8, B25.8+G05.1, B25.9
  • Hospital discharge: ICD-9 0785X
  • Hospital discharge: ICD-8 0795
  • Cause of death: ICD-10 B25.8, B25.8+G05.1, B25.9
  • Cause of death: ICD-9 0785X
  • Cause of death: ICD-8 0795

2 out of 7 registries used, show all original rules.

592

4. Check minimum number of events

None

592

5. Include endpoints

None

592

6. Filter based on genotype QC (FinnGen only)

549

Control definitions (FinnGen only)

Control exclude IBD_CMV

Extra metadata

First used in FinnGen datafreeze DF2

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 3534 1602 1906
Only index persons 2987 1369 1618
Unadjusted period prevalence (%)
Whole population 0.05 0.05 0.05
Only index persons 0.06 0.05 0.06
Median age at first event (years)
Whole population 51.68 52.05 51.36
Only index persons 52.44 52.68 52.24

-FinnGen-

Key figures

All Female Male
Number of individuals 549 278 271
Unadjusted period prevalence (%) 0.12 0.11 0.14
Median age at first event (years) 53.24 50.52 56.02

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint CMV_NOS and mortality.

Females

Parameter HR [95% CI] p-value
CMV_NOS 9.487 [7.39, 12.17] < 0.001
Birth year 0.993 [0.98, 1.0] 0.116

During the follow-up period (1.1.1998 — 31.12.2019), 357 out of 1188 females with CMV_NOS died.

Males

Parameter HR [95% CI] p-value
CMV_NOS 7.015 [5.52, 8.92] < 0.001
Birth year 0.988 [0.98, 1.0] 0.01

During the follow-up period (1.1.1998 — 31.12.2019), 461 out of 1368 males with CMV_NOS died.

Mortality risk

Mortality risk for people of age

years, who have CMV_NOS.

N-year risk Females Males
1 0.788% 1.214%
5 5.163% 7.644%
10 11.688% 18.808%
15 22.762% 32.33%
20 36.887% 49.928%

Relationships between endpoints

Index endpoint: CMV_NOS – Other/unspecified cytomegaloviral diseases

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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