Benign neoplasm: Pancreas

CD2_BENIGN_PANCREAS

Malignant Pancreatic Neoplasm: A primary or metastatic malignant tumor involving the pancreas. Representative examples include carcinoma and lymphoma. -- 2003

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Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D13.6&
  • Hospital discharge: ICD-9 2116
  • Hospital discharge: ICD-8 21160
  • Cause of death: ICD-10 D13.6&
  • Cause of death: ICD-9 2116
  • Cause of death: ICD-8 21160

2 out of 7 registries used, show all original rules.

715

4. Check minimum number of events

None

715

5. Include endpoints

None

715

6. Filter based on genotype QC (FinnGen only)

701

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 D13
Name in latin Neoplasma benignum pancreatis

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 4049 2363 1645
Only index persons 3590 2126 1464
Unadjusted period prevalence (%)
Whole population 0.06 0.07 0.05
Only index persons 0.07 0.08 0.06
Median age at first event (years)
Whole population 69.61 70.03 69.18
Only index persons 69.51 69.68 69.25

-FinnGen-

Key figures

All Female Male
Number of individuals 701 409 292
Unadjusted period prevalence (%) 0.15 0.16 0.15
Median age at first event (years) 69.51 68.64 70.73

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint CD2_BENIGN_PANCREAS and mortality.

Females

Parameter HR [95% CI] p-value
CD2_BENIGN_PANCREAS 2.49 [2.03, 3.05] < 0.001
Birth year 0.996 [0.99, 1.0] 0.372

During the follow-up period (1.1.1998 — 31.12.2019), 488 out of 1662 females with CD2_BENIGN_PANCREAS died.

Males

Parameter HR [95% CI] p-value
CD2_BENIGN_PANCREAS 3.362 [2.54, 4.46] < 0.001
Birth year 0.988 [0.98, 1.0] 0.011

During the follow-up period (1.1.1998 — 31.12.2019), 427 out of 1130 males with CD2_BENIGN_PANCREAS died.

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_PANCREAS.

N-year risk Females Males
1 0.271% 0.774%
5 1.715% 4.164%
10 4.112% 9.607%
15 7.39% 17.252%
20 12.905% 28.711%

Relationships between endpoints

Index endpoint: CD2_BENIGN_PANCREAS – Benign neoplasm: Pancreas

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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