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This is a non-core endpoint: only basic statistics are computed.

Benign lipomatous neoplasm of spermatic cord

CD2_BENIGN_LIPO_SPERMATIC

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

only males

207946

2. Check conditions

None

207946

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D17.6&
  • Cause of death: ICD-10 D17.6&

2 out of 7 registries used, show all original rules.

40

4. Check minimum number of events

None

40

5. Include endpoints

None

40

6. Filter based on genotype QC (FinnGen only)

40

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 D17
Name in latin Neoplasma benignum lipomatosum funiculi spermatici

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 543 - 543
Only index persons 497 - 497
Unadjusted period prevalence (%)
Whole population 0.02 - 0.02
Only index persons 0.02 - 0.02
Median age at first event (years)
Whole population - - 57.75
Only index persons - - 56.61

-FinnGen-

Key figures

All Female Male
Number of individuals 40 - 40
Unadjusted period prevalence (%) 0.02 - 0.02
Median age at first event (years) 57.59 - 57.59

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

Mortality – FinRegistry

Association

Association between endpoint CD2_BENIGN_LIPO_SPERMATIC and mortality.

Females

No data

Males

Parameter HR [95% CI] p-value
CD2_BENIGN_LIPO_SPERMATIC 0.961 [0.81, 1.14] 0.64
Birth year 0.985 [0.98, 1.0] 0.003

During the follow-up period (1.1.1998 — 31.12.2019), 145 out of 504 males with CD2_BENIGN_LIPO_SPERMATIC died.

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_LIPO_SPERMATIC.

N-year risk Females Males
1 No data 0.174%
5 No data 1.045%
10 No data 2.736%
15 No data 4.963%
20 No data 8.282%

Relationships between endpoints

Index endpoint: CD2_BENIGN_LIPO_SPERMATIC – Benign lipomatous neoplasm of spermatic cord

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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