Benign lipomatous neoplasm

CD2_BENIGN_LIPOMATOUS

lipoma: A benign, usually painless, well-circumscribed lipomatous tumor composed of adipose tissue.

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Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D17
  • Cause of death: ICD-10 D17

2 out of 7 registries used, show all original rules.

10615

4. Check minimum number of events

None

10615

5. Include endpoints

11943

6. Filter based on genotype QC (FinnGen only)

11458

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2
First used in FinnGen datafreeze DF2
Parent code in ICD-10 D10-D36
Name in latin Neoplasma benignum lipomatosum

Similar endpoints

List of similar endpoints to Benign lipomatous neoplasm based on the number of shared cases.

Venn diagram with an highlighted set fully inside another set Similar with more cases:

Venn diagram with a set fully inside an highlighted set Similar with less cases:

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 95153 51162 43338
Only index persons 86816 47430 39386
Unadjusted period prevalence (%)
Whole population 1.34 1.47 1.21
Only index persons 1.63 1.74 1.50
Median age at first event (years)
Whole population 52.40 52.99 51.72
Only index persons 51.66 52.34 50.84

-FinnGen-

Key figures

All Female Male
Number of individuals 11458 6539 4919
Unadjusted period prevalence (%) 2.53 2.57 2.47
Median age at first event (years) 53.21 52.18 54.57

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint CD2_BENIGN_LIPOMATOUS and mortality.

Females

Parameter HR [95% CI] p-value
CD2_BENIGN_LIPOMATOUS 0.93 [0.85, 1.01] 0.101
Birth year 0.996 [0.99, 1.01] 0.373

During the follow-up period (1.1.1998 — 31.12.2019), 3530 out of 35467 females with CD2_BENIGN_LIPOMATOUS died.

Males

Parameter HR [95% CI] p-value
CD2_BENIGN_LIPOMATOUS 0.877 [0.81, 0.95] 0.002
Birth year 0.985 [0.98, 0.99] 0.002

During the follow-up period (1.1.1998 — 31.12.2019), 4064 out of 31637 males with CD2_BENIGN_LIPOMATOUS died.

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_LIPOMATOUS.

N-year risk Females Males
1 0.063% 0.159%
5 0.513% 1.004%
10 1.457% 2.559%
15 2.702% 4.584%
20 4.825% 7.763%

Relationships between endpoints

Index endpoint: CD2_BENIGN_LIPOMATOUS – Benign lipomatous neoplasm

GWS hits: 5

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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