Benign neoplasm: Larynx

CD2_BENIGN_LARYNX

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D14.1&
  • Hospital discharge: ICD-9 2121
  • Hospital discharge: ICD-8 2121
  • Cause of death: ICD-10 D14.1&
  • Cause of death: ICD-9 2121
  • Cause of death: ICD-8 2121

2 out of 7 registries used, show all original rules.

1075

4. Check minimum number of events

None

1075

5. Include endpoints

None

1075

6. Filter based on genotype QC (FinnGen only)

1045

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 D14
Name in latin Neoplasma benignum laryngis

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 7637 2657 4895
Only index persons 6316 2327 3989
Unadjusted period prevalence (%)
Whole population 0.12 0.08 0.14
Only index persons 0.13 0.09 0.15
Median age at first event (years)
Whole population 55.93 55.72 55.94
Only index persons 54.31 54.47 54.22

-FinnGen-

Key figures

All Female Male
Number of individuals 1045 338 707
Unadjusted period prevalence (%) 0.28 0.13 0.36
Median age at first event (years) 56.32 52.05 58.36

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint CD2_BENIGN_LARYNX and mortality.

Females

Parameter HR [95% CI] p-value
CD2_BENIGN_LARYNX 1.44 [1.24, 1.67] < 0.001
Birth year 0.999 [0.99, 1.01] 0.792

During the follow-up period (1.1.1998 — 31.12.2019), 365 out of 1646 females with CD2_BENIGN_LARYNX died.

Males

Parameter HR [95% CI] p-value
CD2_BENIGN_LARYNX 1.766 [1.57, 1.99] < 0.001
Birth year 0.985 [0.97, 0.99] 0.002

During the follow-up period (1.1.1998 — 31.12.2019), 973 out of 3146 males with CD2_BENIGN_LARYNX died.

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_LARYNX.

N-year risk Females Males
1 0.172% 0.328%
5 1.02% 1.903%
10 2.305% 4.549%
15 4.399% 8.697%
20 7.596% 14.442%

Relationships between endpoints

Index endpoint: CD2_BENIGN_LARYNX – Benign neoplasm: Larynx

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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