Benign neoplasm: Connective and other soft tissue of upper limb, including shoulder

CD2_BENIGN_CONNSOFT_UPPERLIMB

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D21.1&
  • Hospital discharge: ICD-9 2152
  • Hospital discharge: ICD-8 21503
  • Cause of death: ICD-10 D21.1&
  • Cause of death: ICD-9 2152
  • Cause of death: ICD-8 21503

2 out of 7 registries used, show all original rules.

1530

4. Check minimum number of events

None

1530

5. Include endpoints

None

1530

6. Filter based on genotype QC (FinnGen only)

1467

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 D21
Name in latin Neoplasma benignum textus connectivi/textus mollis regionis deltoideae

Similar endpoints

List of similar endpoints to Benign neoplasm: Connective and other soft tissue of upper limb, including shoulder based on the number of shared cases.

Venn diagram with an highlighted set fully inside another set Similar with more cases:

Venn diagram with a set fully inside an highlighted set Similar with less cases:

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 11643 6413 5178
Only index persons 10885 6072 4813
Unadjusted period prevalence (%)
Whole population 0.17 0.18 0.14
Only index persons 0.21 0.22 0.18
Median age at first event (years)
Whole population 46.94 47.68 45.95
Only index persons 46.41 47.26 45.33

-FinnGen-

Key figures

All Female Male
Number of individuals 1467 893 574
Unadjusted period prevalence (%) 0.33 0.35 0.29
Median age at first event (years) 49.86 48.61 51.81

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint CD2_BENIGN_CONNSOFT_UPPERLIMB and mortality.

Females

Parameter HR [95% CI] p-value
CD2_BENIGN_CONNSOFT_UPPERLIMB 0.94 [0.82, 1.08] 0.387
Birth year 0.99 [0.98, 1.0] 0.028

During the follow-up period (1.1.1998 — 31.12.2019), 318 out of 4348 females with CD2_BENIGN_CONNSOFT_UPPERLIMB died.

Males

Parameter HR [95% CI] p-value
CD2_BENIGN_CONNSOFT_UPPERLIMB 0.861 [0.75, 0.99] 0.039
Birth year 0.99 [0.98, 1.0] 0.028

During the follow-up period (1.1.1998 — 31.12.2019), 344 out of 3643 males with CD2_BENIGN_CONNSOFT_UPPERLIMB died.

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_CONNSOFT_UPPERLIMB.

N-year risk Females Males
1 0.063% 0.184%
5 0.461% 1.067%
10 1.17% 2.703%
15 2.402% 5.095%
20 4.083% 8.63%

Relationships between endpoints

Index endpoint: CD2_BENIGN_CONNSOFT_UPPERLIMB – Benign neoplasm: Connective and other soft tissue of upper limb, including shoulder

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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