Benign neoplasm: Central nervous system, other parts/unspecified

CD2_BENIGN_CNS_NOS

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D33.7&
  • Hospital discharge: ICD-9 2259
  • Hospital discharge: ICD-8 2259
  • Cause of death: ICD-10 D33.7&
  • Cause of death: ICD-9 2259
  • Cause of death: ICD-8 2259

2 out of 7 registries used, show all original rules.

117

4. Check minimum number of events

None

117

5. Include endpoints

None

117

6. Filter based on genotype QC (FinnGen only)

111

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 D33
Name in latin Neoplasma benignum alterius partis specificatae systematis nervosi centralis

Similar endpoints

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 1132 596 527
Only index persons 873 465 408
Unadjusted period prevalence (%)
Whole population 0.02 0.02 0.01
Only index persons 0.02 0.02 0.02
Median age at first event (years)
Whole population 48.75 50.58 46.64
Only index persons 46.11 47.21 44.85

-FinnGen-

Key figures

All Female Male
Number of individuals 111 54 57
Unadjusted period prevalence (%) 0.03 0.02 0.03
Median age at first event (years) 47.97 47.53 48.38

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

Association

Association between endpoint CD2_BENIGN_CNS_NOS and mortality.

Females

Parameter HR [95% CI] p-value
CD2_BENIGN_CNS_NOS 1.387 [1.01, 1.9] 0.041
Birth year 1.001 [0.99, 1.01] 0.808

During the follow-up period (1.1.1998 — 31.12.2019), 52 out of 315 females with CD2_BENIGN_CNS_NOS died.

Males

Parameter HR [95% CI] p-value
CD2_BENIGN_CNS_NOS 1.853 [1.28, 2.68] 0.001
Birth year 0.989 [0.98, 1.0] 0.022

During the follow-up period (1.1.1998 — 31.12.2019), 60 out of 283 males with CD2_BENIGN_CNS_NOS died.

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_CNS_NOS.

N-year risk Females Males
1 0.154% 0.343%
5 0.934% 2.159%
10 2.392% 5.722%
15 4.796% 10.819%
20 8.598% 17.648%

Relationships between endpoints

Index endpoint: CD2_BENIGN_CNS_NOS – Benign neoplasm: Central nervous system, other parts/unspecified

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
loading spinner Loading data