gum cancer: A primary or metastatic malignant neoplasm that affects the gums.
Benign neoplasm: Short bones of upper limb
DOID EFO Endpoint Browser PheWeb
CD2_BENIGN_BONE_SHORT_UPPER
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
473681 |
1. Apply sex-specific ruleNone |
473681 |
2. Check conditionsNone |
473681 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
508 |
4. Check minimum number of eventsNone |
508 |
5. Include endpointsNone |
508 |
6. Filter based on genotype QC (FinnGen only) |
491 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF2
Parent code in ICD-10
D16
Name in latin
Neoplasma benignum ossium brevium membri superioris
Similar endpoints
↥List of similar endpoints to
Benign neoplasm: Short bones of upper limb
based on the number of shared cases.
Similar with more cases:
- Benign neoplasm: Short bones of upper limb
- Benign neoplasm of bone and articular cartilage
- Benign neoplasm of bone and articular cartilage
- Benign neoplasms
- Benign neoplasms
Similar with less cases:
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 4153 | 2166 | 1973 |
| Only index persons | 3902 | 2072 | 1830 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.06 | 0.06 | 0.06 |
| Only index persons | 0.07 | 0.08 | 0.07 |
| Median age at first event (years) | |||
| Whole population | 38.27 | 40.19 | 36.12 |
| Only index persons | 38.06 | 40.09 | 35.77 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 491 | 314 | 177 |
| Unadjusted period prevalence (%) | 0.11 | 0.12 | 0.09 |
| Median age at first event (years) | 43.30 | 43.21 | 43.46 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
No data
Mortality – FinRegistry
↥Association
Association between endpoint CD2_BENIGN_BONE_SHORT_UPPER and mortality.
Females
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| CD2_BENIGN_BONE_SHORT_UPPER | 0.944 [0.72, 1.23] | 0.672 |
| Birth year | 0.997 [0.99, 1.01] | 0.516 |
During the follow-up period (1.1.1998 — 31.12.2019), 58 out of 1306 females with CD2_BENIGN_BONE_SHORT_UPPER died.
Males
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| CD2_BENIGN_BONE_SHORT_UPPER | 1.044 [0.83, 1.31] | 0.71 |
| Birth year | 0.988 [0.98, 1.0] | 0.016 |
During the follow-up period (1.1.1998 — 31.12.2019), 86 out of 1186 males with CD2_BENIGN_BONE_SHORT_UPPER died.
Mortality risk
Mortality risk for people of age
years, who have CD2_BENIGN_BONE_SHORT_UPPER.| N-year risk | Females | Males |
|---|---|---|
| 1 | 0.111% | 0.233% |
| 5 | 0.545% | 1.21% |
| 10 | 1.497% | 3.125% |
| 15 | 2.917% | 5.91% |
| 20 | 5.199% | 10.258% |
Relationships between endpoints
↥Index endpoint: CD2_BENIGN_BONE_SHORT_UPPER – Benign neoplasm: Short bones of upper limb
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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