tongue neoplasm: A neoplasm (disease) that involves the tongue.
Benign neoplasm: Scapula and long bones of upper limb
DOID EFO Endpoint Browser PheWeb
CD2_BENIGN_BONE_SCAPULA_LONG_UPPER
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
473681 |
1. Apply sex-specific ruleNone |
473681 |
2. Check conditionsNone |
473681 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
335 |
4. Check minimum number of eventsNone |
335 |
5. Include endpointsNone |
335 |
6. Filter based on genotype QC (FinnGen only) |
322 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF2
Parent code in ICD-10
D16
Name in latin
Neoplasma benignum scapulae sive ossium longorum membri superioris
Similar endpoints
↥List of similar endpoints to
Benign neoplasm: Scapula and long bones of upper limb
based on the number of shared cases.
Similar with more cases:
- Benign neoplasm: Scapula and long bones of upper limb
- Benign neoplasm of bone and articular cartilage
- Benign neoplasm of bone and articular cartilage
- Benign neoplasms
- Benign neoplasms
Similar with less cases:
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 3001 | 1340 | 1651 |
| Only index persons | 2788 | 1256 | 1532 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.04 | 0.04 | 0.05 |
| Only index persons | 0.05 | 0.05 | 0.06 |
| Median age at first event (years) | |||
| Whole population | 28.48 | 34.17 | 23.81 |
| Only index persons | 27.91 | 34.14 | 22.80 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 322 | 171 | 151 |
| Unadjusted period prevalence (%) | 0.07 | 0.07 | 0.08 |
| Median age at first event (years) | 34.48 | 34.77 | 34.15 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
No data
Mortality – FinRegistry
↥Association
Association between endpoint CD2_BENIGN_BONE_SCAPULA_LONG_UPPER and mortality.
Females
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| CD2_BENIGN_BONE_SCAPULA_LONG_UPPER | 1.04 [0.75, 1.44] | 0.814 |
| Birth year | 0.993 [0.98, 1.0] | 0.1 |
During the follow-up period (1.1.1998 — 31.12.2019), 53 out of 841 females with CD2_BENIGN_BONE_SCAPULA_LONG_UPPER died.
Males
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| CD2_BENIGN_BONE_SCAPULA_LONG_UPPER | 0.846 [0.65, 1.1] | 0.217 |
| Birth year | 0.987 [0.98, 1.0] | 0.007 |
During the follow-up period (1.1.1998 — 31.12.2019), 69 out of 986 males with CD2_BENIGN_BONE_SCAPULA_LONG_UPPER died.
Mortality risk
Mortality risk for people of age
years, who have CD2_BENIGN_BONE_SCAPULA_LONG_UPPER.| N-year risk | Females | Males |
|---|---|---|
| 1 | 0.075% | 0.198% |
| 5 | 0.646% | 1.007% |
| 10 | 1.443% | 2.695% |
| 15 | 2.829% | 5.179% |
| 20 | 5.114% | 8.344% |
Relationships between endpoints
↥Index endpoint: CD2_BENIGN_BONE_SCAPULA_LONG_UPPER – Benign neoplasm: Scapula and long bones of upper limb
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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