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Benign neoplasm: Bone and articular cartilage, unspecified

DOID EFO Endpoint Browser PheWeb

CD2_BENIGN_BONE_CARTILAGE_NOS

bone neoplasm: A benign, intermediate, or malignant neoplasm involving the bone or articular cartilage.

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Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — D16.90&, D16.91&
  • Hospital discharge: ICD-9 — 2139
  • Hospital discharge: ICD-8 — 2130[8-9]
  • Cause of death: ICD-10 — D16.90&, D16.91&
  • Cause of death: ICD-9 — 2139
  • Cause of death: ICD-8 — 2130[8-9]

2 out of 7 registries used, show all original rules.

245

4. Check minimum number of events

None

245

5. Include endpoints

None

245

6. Filter based on genotype QC (FinnGen only)

232

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 2211 1137 1059
Only index persons 1934 1023 911
Unadjusted period prevalence (%)
Whole population 0.03 0.03 0.03
Only index persons 0.04 0.04 0.03
Median age at first event (years)
Whole population 35.83 38.19 33.13
Only index persons 33.83 37.05 30.22

-FinnGen-

Key figures

All Female Male
Number of individuals 232 133 99
Unadjusted period prevalence (%) 0.05 0.05 0.05
Median age at first event (years) 39.10 37.45 41.32

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

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Association

Association between endpoint CD2_BENIGN_BONE_CARTILAGE_NOS and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_BONE_CARTILAGE_NOS.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

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Index endpoint: CD2_BENIGN_BONE_CARTILAGE_NOS – Benign neoplasm: Bone and articular cartilage, unspecified

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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