Benign neoplasm: Appendix

CD2_BENIGN_APPENDIX

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D12.1&
  • Hospital discharge: ICD-8 21131
  • Cause of death: ICD-10 D12.1&
  • Cause of death: ICD-8 21131

2 out of 7 registries used, show all original rules.

320

4. Check minimum number of events

None

320

5. Include endpoints

None

320

6. Filter based on genotype QC (FinnGen only)

310

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 4
First used in FinnGen datafreeze DF2
Parent code in ICD-10 D12
Name in latin Neoplasma benignum appendicis vermiformis

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 2109 1194 910
Only index persons 1983 1129 854
Unadjusted period prevalence (%)
Whole population 0.03 0.03 0.03
Only index persons 0.04 0.04 0.03
Median age at first event (years)
Whole population 65.07 63.69 66.86
Only index persons 64.78 63.24 66.80

-FinnGen-

Key figures

All Female Male
Number of individuals 310 170 140
Unadjusted period prevalence (%) 0.07 0.07 0.07
Median age at first event (years) 65.98 63.61 68.86

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

Association

Association between endpoint CD2_BENIGN_APPENDIX and mortality.

Females

Parameter HR [95% CI] p-value
CD2_BENIGN_APPENDIX 1.145 [0.93, 1.41] 0.206
Birth year 0.999 [0.99, 1.01] 0.73

During the follow-up period (1.1.1998 — 31.12.2019), 186 out of 979 females with CD2_BENIGN_APPENDIX died.

Males

Parameter HR [95% CI] p-value
CD2_BENIGN_APPENDIX 1.264 [1.04, 1.54] 0.019
Birth year 0.984 [0.97, 0.99] 0.003

During the follow-up period (1.1.1998 — 31.12.2019), 219 out of 743 males with CD2_BENIGN_APPENDIX died.

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_APPENDIX.

N-year risk Females Males
1 0.116% 0.274%
5 0.71% 1.536%
10 1.883% 3.573%
15 3.424% 6.429%
20 5.936% 10.78%

Relationships between endpoints

Index endpoint: CD2_BENIGN_APPENDIX – Benign neoplasm: Appendix

GWS hits: 3

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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