Neuroendocrine tumor and carcinoma of pancreas

C3_PANCREAS_NEUROENDOCRINE_EXALLC

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

None

-

2. Check conditions

None

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Cancer registry: Topography ICD-O-3 C25
  • Cancer registry: Morphology ICD-O-3 8240|8246|8249
  • Cancer registry: Behaviour codes 3

1 out of 7 registries used, show all original rules.

-

4. Check minimum number of events

None

-

5. Include endpoints

None

-

6. Filter based on genotype QC (FinnGen only)

None

-

Control definitions (FinnGen only)

Control exclude C3_CANCER, C3_CANCER_WIDE

Extra metadata

First used in FinnGen datafreeze DF8

Case counts by codes

FinnGen case counts by registry codes:

No upset plot: script not run.

No upset table: script not run.

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 851 417 428
Only index persons 724 362 362
Unadjusted period prevalence (%)
Whole population 0.01 0.01 0.01
Only index persons 0.01 0.01 0.01
Median age at first event (years)
Whole population 63.08 62.39 63.77
Only index persons 62.77 61.92 63.62

-FinnGen-

Key figures

All Female Male
Number of individuals 169 81 88
Unadjusted period prevalence (%) 0.04 0.03 0.04
Median age at first event (years) 60.20 57.62 62.58

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

Association

Association between endpoint C3_PANCREAS_NEUROENDOCRINE_EXALLC and mortality.

Females

Parameter HR [95% CI] p-value
C3_PANCREAS_NEUROENDOCRINE_EXALLC 6.893 [4.67, 10.18] < 0.001
Birth year 0.997 [0.99, 1.01] 0.519

During the follow-up period (1.1.1998 — 31.12.2019), 133 out of 341 females with C3_PANCREAS_NEUROENDOCRINE_EXALLC died.

Males

Parameter HR [95% CI] p-value
C3_PANCREAS_NEUROENDOCRINE_EXALLC 6.688 [4.16, 10.76] < 0.001
Birth year 0.983 [0.97, 0.99] < 0.001

During the follow-up period (1.1.1998 — 31.12.2019), 143 out of 345 males with C3_PANCREAS_NEUROENDOCRINE_EXALLC died.

Mortality risk

Mortality risk for people of age

years, who have C3_PANCREAS_NEUROENDOCRINE_EXALLC.

N-year risk Females Males
1 0.669% 1.281%
5 4.301% 7.728%
10 10.206% 16.913%
15 19.23% 28.921%
20 32.028% 45.297%

Relationships between endpoints

Index endpoint: C3_PANCREAS_NEUROENDOCRINE_EXALLC – Neuroendocrine tumor and carcinoma of pancreas

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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