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Scarlet fever

EFO Endpoint Browser PheWeb

AB1_SCARLET_FEVER

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A38
  • Hospital discharge: ICD-9 — 03[4]
  • Hospital discharge: ICD-8 — 03[4]
  • Hospital discharge: excluded ICD-9 — 034[0]
  • Hospital discharge: excluded ICD-8 — 034[0]
  • Cause of death: ICD-10 — A38
  • Cause of death: ICD-9 — 03[4]
  • Cause of death: ICD-8 — 03[4]
  • Cause of death: excluded ICD-9 — 034[0]
  • Cause of death: excluded ICD-8 — 034[0]

2 out of 7 registries used, show all original rules.

225

4. Check minimum number of events

None

225

5. Include endpoints

None

225

6. Filter based on genotype QC (FinnGen only)

222

Control definitions (FinnGen only)

Control exclude AB1_OTHER_BACTERIAL

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF5

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 4075 1777 2286
Only index persons 3185 1380 1805
Unadjusted period prevalence (%)
Whole population 0.06 0.05 0.06
Only index persons 0.06 0.05 0.07
Median age at first event (years)
Whole population 7.01 6.65 7.16
Only index persons 7.59 7.19 7.90

-FinnGen-

Key figures

All Female Male
Number of individuals 222 127 95
Unadjusted period prevalence (%) 0.05 0.05 0.05
Median age at first event (years) 10.70 9.30 12.58

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

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Association

Association between endpoint AB1_SCARLET_FEVER and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have AB1_SCARLET_FEVER.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

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Index endpoint: AB1_SCARLET_FEVER – Scarlet fever

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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