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Rickettsioses

DOID EFO Endpoint Browser PheWeb

AB1_RICKETTSIOSES

spotted fever: a type of tick-borne disease which presents on the skin caused by bacteria of the genus Rickettsia.

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Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A75-A79
  • Hospital discharge: ICD-9 — 08[2-3]
  • Hospital discharge: ICD-8 — 08[0-3]
  • Cause of death: ICD-10 — A75-A79
  • Cause of death: ICD-9 — 08[2-3]
  • Cause of death: ICD-8 — 08[0-3]

2 out of 7 registries used, show all original rules.

-

4. Check minimum number of events

None

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5. Include endpoints

57

6. Filter based on genotype QC (FinnGen only)

55

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy 2
First used in FinnGen datafreeze DF2

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 591 237 350
Only index persons 501 200 301
Unadjusted period prevalence (%)
Whole population 0.01 0.01 0.01
Only index persons 0.01 0.01 0.01
Median age at first event (years)
Whole population 44.51 45.50 43.80
Only index persons 42.27 44.06 41.09

-FinnGen-

Key figures

All Female Male
Number of individuals 55 23 32
Unadjusted period prevalence (%) 0.01 0.01 0.02
Median age at first event (years) 51.41 47.49 54.22

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

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Association

Association between endpoint AB1_RICKETTSIOSES and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have AB1_RICKETTSIOSES.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

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Index endpoint: AB1_RICKETTSIOSES – Rickettsioses

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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