male genital tuberculosis: mycobacterium infections of the male reproductive tract (genitalia, male).
Other congenital malformations of male genital organs
DOID EFO Endpoint Browser PheWeb
Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
473681 |
1. Apply sex-specific ruleNone |
473681 |
2. Check conditionsNone |
473681 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
244 |
4. Check minimum number of eventsNone |
244 |
5. Include endpointsNone |
244 |
6. Filter based on genotype QC (FinnGen only) |
217 |
Control definitions (FinnGen only)
Control exclude
Q17_CONGEN_MALFO_GENITAL_ORGANS
Extra metadata
Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF4
Parent code in ICD-10
Q5
Name in latin
Aliae malformationes congenitae organorum genitalium masculinorum
Similar endpoints
↥List of similar endpoints to
Other congenital malformations of male genital organs
based on the number of shared cases.
Similar with more cases:
- Congenital malformations of genital organs
- Congenital malformations, deformations and chromosomal abnormalities
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 13562 | 31 | 13525 |
| Only index persons | 8712 | 30 | 8682 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.38 | 0.00 | 0.38 |
| Only index persons | 0.33 | 0.00 | 0.33 |
| Median age at first event (years) | |||
| Whole population | 4.24 | 20.79 | 4.18 |
| Only index persons | 5.50 | 21.76 | 5.44 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 217 | 6 | 211 |
| Unadjusted period prevalence (%) | 0.10 | 0.00 | 0.11 |
| Median age at first event (years) | 9.55 | 37.69 | 8.75 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
No data
Mortality – FinRegistry
↥Association
Association between endpoint Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS and mortality.
Females
No dataMales
| Parameter | HR [95% CI] | p-value |
|---|---|---|
| Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS | 0.736 [0.53, 1.03] | 0.073 |
| Birth year | 0.986 [0.98, 1.0] | 0.006 |
During the follow-up period (1.1.1998 — 31.12.2019), 69 out of 12146 males with Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS died.
Mortality risk
Mortality risk for people of age
years, who have Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | 0.154% |
| 5 | No data | 0.759% |
| 10 | No data | 2.043% |
| 15 | No data | 3.935% |
| 20 | No data | 6.86% |
Relationships between endpoints
↥Index endpoint: Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS – Other congenital malformations of male genital organs
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
Loading data