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Pain and other conditions associated with female genital organs and menstrual cycle

EFO MESH Endpoint Browser PheWeb

N14_FEMGENPAIN

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

only females

265735

2. Check conditions

None

265735

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — N94
  • Hospital discharge: ICD-9 — 625
  • Hospital discharge: ICD-8 — 6263
  • Hospital discharge: excluded ICD-9 — 6256
  • Cause of death: ICD-10 — N94
  • Cause of death: ICD-9 — 625
  • Cause of death: ICD-8 — 6263
  • Cause of death: excluded ICD-9 — 6256

2 out of 7 registries used, show all original rules.

9347

4. Check minimum number of events

None

9347

5. Include endpoints

9347

6. Filter based on genotype QC (FinnGen only)

8894

Control definitions (FinnGen only)

Control exclude N14_FEMALEGENNONINF

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF2
Parent code in ICD-10 N80-N98
Name in latin Dolor et aliae condiciones organis genitalibus femininis et cyclo menstruali connectae

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 61211 61211 -
Only index persons 59884 59884 -
Unadjusted period prevalence (%)
Whole population 1.75 1.75 -
Only index persons 2.20 2.20 -
Median age at first event (years)
Whole population - 32.56 -
Only index persons - 32.39 -

-FinnGen-

Key figures

All Female Male
Number of individuals 8894 8894 -
Unadjusted period prevalence (%) 3.49 3.49 -
Median age at first event (years) 34.85 34.85 -

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

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Association

Association between endpoint N14_FEMGENPAIN and mortality.

Females

Parameter HR [95% CI] p-value
N14_FEMGENPAIN 0.896 [0.76, 1.06] 0.204
Birth year 0.995 [0.99, 1.0] 0.28

During the follow-up period (1.1.1998 — 31.12.2019), 586 out of 37436 females with N14_FEMGENPAIN died.

Males

No data

Mortality risk

Mortality risk for people of age

years, who have N14_FEMGENPAIN.

N-year risk Females Males
1 0.092% No data
5 0.472% No data
10 1.292% No data
15 2.552% No data
20 4.44% No data

Relationships between endpoints

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Index endpoint: N14_FEMGENPAIN – Pain and other conditions associated with female genital organs and menstrual cycle

GWS hits: 2

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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