Chronic myeloproliferative disease

CHRONMYELOPRO

chronic myeloproliferative disorder: A clonal hematopoietic stem cell disorder, characterized by proliferation in the bone marrow of one or more of the myeloid (i.e., granulocytic, erythroid, megakaryocytic, and mast cell) lineages. It is primarily a neoplasm of adults. (WHO 2008)

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Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D47.1
  • Cause of death: ICD-10 D47.1

2 out of 7 registries used, show all original rules.

396

4. Check minimum number of events

None

396

5. Include endpoints

None

396

6. Filter based on genotype QC (FinnGen only)

382

Control definitions (FinnGen only)

Control exclude MYELOPROF

Extra metadata

First used in FinnGen datafreeze DF2, additional

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 2801 1352 1414
Only index persons 2074 1031 1043
Unadjusted period prevalence (%)
Whole population 0.04 0.04 0.04
Only index persons 0.04 0.04 0.04
Median age at first event (years)
Whole population 70.78 71.37 70.24
Only index persons 69.56 69.80 69.34

-FinnGen-

Key figures

All Female Male
Number of individuals 382 173 209
Unadjusted period prevalence (%) 0.09 0.07 0.10
Median age at first event (years) 67.06 65.82 68.09

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint CHRONMYELOPRO and mortality.

Females

Parameter HR [95% CI] p-value
CHRONMYELOPRO 4.416 [3.64, 5.36] < 0.001
Birth year 0.996 [0.99, 1.0] 0.395

During the follow-up period (1.1.1998 — 31.12.2019), 638 out of 1093 females with CHRONMYELOPRO died.

Males

Parameter HR [95% CI] p-value
CHRONMYELOPRO 4.304 [3.38, 5.49] < 0.001
Birth year 0.988 [0.98, 1.0] 0.008

During the follow-up period (1.1.1998 — 31.12.2019), 708 out of 1119 males with CHRONMYELOPRO died.

Mortality risk

Mortality risk for people of age

years, who have CHRONMYELOPRO.

N-year risk Females Males
1 0.402% 0.735%
5 2.414% 4.819%
10 6.333% 12.442%
15 12.699% 21.902%
20 20.929% 35.833%

Relationships between endpoints

Index endpoint: CHRONMYELOPRO – Chronic myeloproliferative disease

GWS hits: 2

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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