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Chronic myeloid leukaemia

Endpoint Browser PheWeb

C3_CML_EXALLC

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

None

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2. Check conditions

None

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Cause of death: ICD-10 — C92.1
  • Cause of death: ICD-9 — 2051A
  • Cause of death: ICD-8 — 20515
  • Cancer registry: Topography ICD-O-3 — ANY
  • Cancer registry: Morphology ICD-O-3 — 9863|9875
  • Cancer registry: Behaviour codes — 3

2 out of 7 registries used, show all original rules.

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4. Check minimum number of events

None

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5. Include endpoints

None

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6. Filter based on genotype QC (FinnGen only)

None

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Control definitions (FinnGen only)

Control exclude C3_CANCER, C3_CANCER_WIDE

Extra metadata

Level in the ICD hierarchy C
First used in FinnGen datafreeze DF8

Case counts by codes

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FinnGen case counts by registry codes:

No upset plot: script not run.

No upset table: script not run.

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 2195 946 1180
Only index persons 824 359 465
Unadjusted period prevalence (%)
Whole population 0.03 0.03 0.03
Only index persons 0.02 0.01 0.02
Median age at first event (years)
Whole population 57.86 57.94 57.82
Only index persons 57.09 57.50 56.77

-FinnGen-

Key figures

All Female Male
Number of individuals 134 62 72
Unadjusted period prevalence (%) 0.03 0.02 0.04
Median age at first event (years) 56.73 54.95 58.26

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

Mortality – FinRegistry

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Association

Association between endpoint C3_CML_EXALLC and mortality.

Females

Parameter HR [95% CI] p-value
C3_CML_EXALLC 4.241 [2.8, 6.43] < 0.001
Birth year 0.997 [0.99, 1.01] 0.554

During the follow-up period (1.1.1998 — 31.12.2019), 141 out of 377 females with C3_CML_EXALLC died.

Males

Parameter HR [95% CI] p-value
C3_CML_EXALLC 3.742 [2.4, 5.85] < 0.001
Birth year 0.981 [0.97, 0.99] < 0.001

During the follow-up period (1.1.1998 — 31.12.2019), 195 out of 460 males with C3_CML_EXALLC died.

Mortality risk

Mortality risk for people of age

years, who have C3_CML_EXALLC.

N-year risk Females Males
1 0.438% 0.695%
5 2.782% 3.761%
10 7.032% 9.109%
15 12.231% 16.24%
20 20.8% 26.291%

Relationships between endpoints

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Index endpoint: C3_CML_EXALLC – Chronic myeloid leukaemia

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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