Human immunodeficiency virus [HIV] disease resulting in other conditions

AB1_OTHER_CONDITIONS

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 B23
  • Cause of death: ICD-10 B23

2 out of 7 registries used, show all original rules.

590

4. Check minimum number of events

None

590

5. Include endpoints

None

590

6. Filter based on genotype QC (FinnGen only)

479

Control definitions (FinnGen only)

Control exclude AB1_HIV

Extra metadata

Level in the ICD hierarchy 3
First used in FinnGen datafreeze DF5

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 2761 677 1897
Only index persons 2352 643 1709
Unadjusted period prevalence (%)
Whole population 0.05 0.02 0.05
Only index persons 0.05 0.02 0.07
Median age at first event (years)
Whole population 37.99 33.57 39.95
Only index persons 38.02 33.45 39.74

-FinnGen-

Key figures

All Female Male
Number of individuals 479 92 387
Unadjusted period prevalence (%) 0.16 0.04 0.19
Median age at first event (years) 39.79 39.15 39.94

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

Mortality – FinRegistry

Association

Association between endpoint AB1_OTHER_CONDITIONS and mortality.

Females

Parameter HR [95% CI] p-value
AB1_OTHER_CONDITIONS 4.108 [2.91, 5.8] < 0.001
Birth year 0.997 [0.99, 1.01] 0.455

During the follow-up period (1.1.1998 — 31.12.2019), 54 out of 643 females with AB1_OTHER_CONDITIONS died.

Males

Parameter HR [95% CI] p-value
AB1_OTHER_CONDITIONS 2.837 [2.42, 3.32] < 0.001
Birth year 0.989 [0.98, 1.0] 0.018

During the follow-up period (1.1.1998 — 31.12.2019), 266 out of 1729 males with AB1_OTHER_CONDITIONS died.

Mortality risk

Mortality risk for people of age

years, who have AB1_OTHER_CONDITIONS.

N-year risk Females Males
1 0.439% 0.538%
5 2.69% 3.498%
10 5.971% 8.836%
15 12.195% 15.784%
20 20.703% 25.317%

Relationships between endpoints

Index endpoint: AB1_OTHER_CONDITIONS – Human immunodeficiency virus [HIV] disease resulting in other conditions

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
loading spinner Loading data